Berkeley Lab

All Resources

  • open msi
    OpenMSI: Open Mass Spectrometry Imaging
    OpenMSI Website → Advanced science gateway for web-based visualization, analysis and sharing...
  • helix
    Functional Gene Array Design and Microarray...
    Website → Challenges: Biology is undergoing a revolution, driven by the...
  • xcms
    XCMS Online: Scripps Center for Metabolomics
    XCMS Online → Cloud-based metabolomic data processing platform that provides high-quality metabolomic...
  • metlin with molecule
    METLIN: Metabolite and Tandem MS Database
    METLIN Website → Repository of over 75,000 endogenous and exogenous metabolites that...
  • GLAMM_thumbnail
    GLAMM: Genome-Linked Application for Metabolic Maps
    GLAMM Website → Full Paper → The Genome-Linked Application for Metabolic Maps (GLAMM)...
  • Gaggle_thumbnail
    Gaggle
    Gaggle Website → Framework for exchanging data between independently developed software tools...
  • microbesonline
    MicrobesOnline
    MicrobesOnline Website → Database, browser and tools for comparative and functional genomics.
  • networkportal
    Network Portal
    Network Portal Website → Database of gene transcription regulatory networks which enables...
  • Field Samples_thumbnail
    ENIGMA 100-Well Survey Data Site
    ENIGMA Field Sample Info Site → Interface for ENIGMA field samples from...
  • kbase
    DOE Systems Biology Knowledgebase
    DOE Systems Biology Knowledgebase Website → . ENIGMA data stored at...
  • slime
    SLIME: Supervised Learning in Microbial Ecology
    Machine learning tools for the analysis of 16S rRNA and shotgun...
  • dbc
    DBC: Distribution-Based Clustering
    Inferring operational taxonomic units (OTUs) by combining phylogenetic and ecological information.
  • DvH-ring
    Barcoded Transposon Mutant Library
    A D. vulgaris Hildenborough barcoded transposon mutant library → Many mutants have...
  • krona
    Desulfovibrio - Methanococcus Co-Evolution
    Krona Website → Interactive display of mutations identified in evolved co-cultures. We have...